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Research Placement Trainee

Cancer Dynamics Lab, The Francis Crick Institute

Developing a pipeline for automatic segmentation and position calculation of cells in multiplexed fluorescence microscopy.

• Multiplexed Fluorescence Microscopy
• Spatial Biology

Sandwich Placement Laboratory Research Assistant

Electron Microscopy Science Technology Platform, The Francis Crick Institute

Developing napari plugins and developing machine learning models for the automated analysis of volume electron microscopy images.

• Electron Microscopy
• Machine Learning
• BioImage Analysis

Summer Placement Student

School of Biological & Behavioural Sciences, Queen Mary University of London

Learning to use a range of bioinformatics and computational tools to process and analyse large amounts of DNA sequence data

• Bioinformatics
• DNA Methylation

PhD Student

The Francis Crick Institute | The Institue for Cancer Research | Imperial College London

BSc in Computer Science (with Industrial Placement)

Newcastle University

The Pathological Society Undergraduate Elective Bursary

The Pathological Society

Recipient of the Pathological Society Undergraduate Bursary which funded a six-week long research placement in the Cancer Dynamics Lab in the Francis Crick Institute.

CLEM-Reg: An automated point cloud based registration algorithm for correlative light and volume electron microscopy

bioRxiv

Correlative light and volume electron microscopy (vCLEM) allows visualization of fluorescently labeled proteins within their ultrastructural context, but the manual alignment process can be slow and biased. CLEM-Reg is an automated, deep learning-based workflow that aligns vCLEM datasets with near-expert accuracy, and its resources, including datasets and a napari plugin, are publicly available for further development and use.

napari: A Multidimensional Image Viewer for Python. A guide to some of the key concepts of napari

Better Programming

Napari is an open-source, Python-based tool for high-performance visualization, annotation, and analysis of large multidimensional images, with extensive plugin support for handling diverse imaging data types.